Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RPD_0548 | RPD_2280 | RPD_0548 | RPD_2280 | Conserved hypothetical protein. | Transcriptional regulator-like. | 0.449 |
RPD_0548 | RPD_3970 | RPD_0548 | RPD_3970 | Conserved hypothetical protein. | Transcriptional regulator. | 0.505 |
RPD_0548 | RPD_3974 | RPD_0548 | RPD_3974 | Conserved hypothetical protein. | Protein of unknown function DUF497. | 0.571 |
RPD_1603 | RPD_3970 | RPD_1603 | RPD_3970 | Prevent-host-death protein; Antitoxin component of a type II toxin-antitoxin (TA) system. | Transcriptional regulator. | 0.446 |
RPD_1603 | vapC-3 | RPD_1603 | RPD_1602 | Prevent-host-death protein; Antitoxin component of a type II toxin-antitoxin (TA) system. | PilT protein-like; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. | 0.957 |
RPD_1603 | vapC-6 | RPD_1603 | RPD_3079 | Prevent-host-death protein; Antitoxin component of a type II toxin-antitoxin (TA) system. | PilT protein-like; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. | 0.814 |
RPD_2280 | RPD_0548 | RPD_2280 | RPD_0548 | Transcriptional regulator-like. | Conserved hypothetical protein. | 0.449 |
RPD_2280 | RPD_3970 | RPD_2280 | RPD_3970 | Transcriptional regulator-like. | Transcriptional regulator. | 0.420 |
RPD_2916 | RPD_3970 | RPD_2916 | RPD_3970 | Conserved hypothetical protein. | Transcriptional regulator. | 0.410 |
RPD_2916 | RPD_3974 | RPD_2916 | RPD_3974 | Conserved hypothetical protein. | Protein of unknown function DUF497. | 0.454 |
RPD_3968 | RPD_3969 | RPD_3968 | RPD_3969 | Cupin 2, conserved barrel. | 3-oxoacyl-(acyl-carrier protein) synthase. | 0.456 |
RPD_3968 | RPD_3970 | RPD_3968 | RPD_3970 | Cupin 2, conserved barrel. | Transcriptional regulator. | 0.401 |
RPD_3969 | RPD_3968 | RPD_3969 | RPD_3968 | 3-oxoacyl-(acyl-carrier protein) synthase. | Cupin 2, conserved barrel. | 0.456 |
RPD_3969 | RPD_3970 | RPD_3969 | RPD_3970 | 3-oxoacyl-(acyl-carrier protein) synthase. | Transcriptional regulator. | 0.497 |
RPD_3970 | RPD_0548 | RPD_3970 | RPD_0548 | Transcriptional regulator. | Conserved hypothetical protein. | 0.505 |
RPD_3970 | RPD_1603 | RPD_3970 | RPD_1603 | Transcriptional regulator. | Prevent-host-death protein; Antitoxin component of a type II toxin-antitoxin (TA) system. | 0.446 |
RPD_3970 | RPD_2280 | RPD_3970 | RPD_2280 | Transcriptional regulator. | Transcriptional regulator-like. | 0.420 |
RPD_3970 | RPD_2916 | RPD_3970 | RPD_2916 | Transcriptional regulator. | Conserved hypothetical protein. | 0.410 |
RPD_3970 | RPD_3968 | RPD_3970 | RPD_3968 | Transcriptional regulator. | Cupin 2, conserved barrel. | 0.401 |
RPD_3970 | RPD_3969 | RPD_3970 | RPD_3969 | Transcriptional regulator. | 3-oxoacyl-(acyl-carrier protein) synthase. | 0.497 |
page 1 of 2