STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_4002TonB-like. (292 aa)    
Predicted Functional Partners:
RPD_4004
MotA/TolQ/ExbB proton channel.
 
 
 0.951
RPD_4003
Biopolymer transport protein ExbD/TolR.
  
 
 0.916
RPD_2354
TonB-dependent haem/haemoglobin receptor.
 
 
 0.879
RPD_2413
TonB-dependent receptor, plug.
  
 
 0.768
RPD_3065
TonB-dependent receptor.
  
 
 0.768
RPD_2357
MotA/TolQ/ExbB proton channel.
 
 
 0.652
RPD_2358
Biopolymer transport protein ExbD/TolR.
  
 
 0.648
RPD_3332
Biopolymer transport protein ExbD/TolR.
  
 
 0.627
RPD_4149
Biopolymer transport protein ExbD/TolR.
  
 
 0.621
RPD_0700
TonB-dependent siderophore receptor.
 
 
 0.619
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.