Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPD_4014Conserved hypothetical protein. (88 aa)    
Predicted Functional Partners:
RPD_4015
CHAD.
       0.514
RPD_4016
Conserved hypothetical protein.
       0.507
RPD_4010
2-oxoglutarate ferredoxin oxidoreductase, beta subunit.
       0.443
RPD_4011
2-oxoglutarate ferredoxin oxidoreductase, alpha subunit.
       0.443
RPD_4012
Pyruvate ferredoxin/flavodoxin oxidoreductase.
       0.443
RPD_4013
Thiamine pyrophosphate enzyme-like TPP-binding; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
       0.443
RPD_4009
2-oxoglutarate ferredoxin oxidoreductase, gamma subunit.
       0.428
RPD_4008
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
       0.402
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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