Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_4058ABC transporter related. (240 aa)    
Predicted Functional Partners:
RPD_4060
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.973
RPD_4059
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.972
RPD_4056
Extracellular ligand-binding receptor.
 
  
 0.874
RPD_1578
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.771
RPD_4057
ABC transporter related.
 
  
0.756
RPD_1579
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.738
RPD_0777
ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.681
RPD_1891
ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.681
RPD_3558
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.676
RPD_1587
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.657
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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