Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RPD_4062NADH:flavin oxidoreductase/NADH oxidase. (462 aa)    
Predicted Functional Partners:
RPD_4061
Conserved hypothetical protein.
     
 0.736
RPD_0930
Electron transfer flavoprotein beta-subunit.
  
 
 0.656
RPD_1088
Electron transfer flavoprotein beta-subunit.
  
 
 0.656
RPD_4060
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
     
 0.610
RPD_0278
Transcriptional regulator, CarD family.
   
    0.575
RPD_4058
ABC transporter related.
     
 0.575
RPD_4063
Extracellular solute-binding protein, family 1.
   
  
 0.467
RPD_0192
SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
  
 0.428
RPD_3916
L-lactate dehydrogenase (cytochrome).
  
  
 0.417
tuf1
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
  
 0.415
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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