Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_4064Conserved hypothetical protein. (128 aa)    
Predicted Functional Partners:
RPD_4065
Binding-protein-dependent transport systems inner membrane component.
 
    0.968
RPD_4066
Binding-protein-dependent transport systems inner membrane component.
 
    0.967
RPD_4067
ABC transporter related; Belongs to the ABC transporter superfamily.
 
    0.966
RPD_4068
ABC transporter related; Belongs to the ABC transporter superfamily.
 
    0.965
RPD_4063
Extracellular solute-binding protein, family 1.
 
     0.939
RPD_4069
FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.799
RPD_4070
Transcriptional regulator, DeoR family.
 
     0.755
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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