Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_40753-demethylubiquinone-9 3-methyltransferase. (74 aa)    
Predicted Functional Partners:
RPD_4159
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.760
RPD_4076
Hpt sensor hybrid histidine kinase.
       0.645
RPD_4162
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.538
RPD_4155
Conserved hypothetical protein.
 
    0.500
RPD_4074
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.476
RPD_0934
Protein of unknown function DUF1428.
 
     0.467
RPD_1207
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
     0.461
RPD_4073
Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.456
RPD_4072
Transcriptional regulator, TetR family.
       0.433
RPD_4071
Conserved hypothetical protein.
       0.412
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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