Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_4077CsbD-like; Belongs to the UPF0337 (CsbD) family. (71 aa)    
Predicted Functional Partners:
RPD_2934
Protein of unknown function DUF1328.
  
  
 0.792
RPD_3366
Protein of unknown function DUF1328.
  
  
 0.792
RPD_1491
Transport-associated.
 
    0.724
RPD_1344
CBS:transport associated.
  
    0.682
RPD_1401
OsmC-like protein.
  
  
 0.586
RPD_4311
Conserved hypothetical protein.
  
     0.536
RPD_2056
Conserved hypothetical protein.
  
     0.509
RPD_4345
Protein of unknown function DUF1192.
  
     0.485
RPD_3834
Ferritin and Dps; Belongs to the Dps family.
  
  
 0.458
RPD_0927
Ribonuclease BN.
 
    0.448
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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