Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_40855-carboxymethyl-2-hydroxymuconate delta-isomerase. (280 aa)    
Predicted Functional Partners:
RPD_4086
Glutathione S-transferase-like.
  
  
 0.668
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
  
  
 0.581
RPD_4084
Beta-lactamase-like.
       0.560
RPD_4083
Conserved hypothetical protein.
       0.482
RPD_2637
Dimethylmenaquinone methyltransferase.
    
 0.464
RPD_3589
2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
  
  
 0.452
RPD_3586
HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.436
RPD_3590
5-carboxymethyl-2-hydroxymuconate isomerase.
 
  
 0.403
RPD_3490
ATP dependent DNA ligase.
  
    0.400
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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