Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPD_4192Ferric reductase-like transmembrane component-like. (421 aa)    
Predicted Functional Partners:
RPD_4191
Cytochrome b5.
 
     0.882
RPD_4193
Conserved hypothetical protein.
       0.868
RPD_3292
Salicylate 1-monooxygenase.
   
    0.789
RPD_1042
Putative nitrile hydratase regulator.
   
    0.563
RPD_3510
Twin-arginine translocation pathway signal.
   
    0.563
RPD_3864
Amide-urea binding protein.
   
    0.563
RPD_4056
Extracellular ligand-binding receptor.
   
    0.563
RPD_4292
Putative urea/short-chain amide transport system substrate-binding protein.
   
    0.563
RPD_4295
Putative aliphatic amidase expression-regulating protein, AmiC.
   
    0.563
RPD_4194
Cysteine synthase.
     
 0.425
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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