Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPD_4196Protein of unknown function DUF6, transmembrane. (293 aa)    
Predicted Functional Partners:
RPD_4195
Conserved hypothetical protein.
  
    0.780
RPD_4194
Cysteine synthase.
     
 0.778
RPD_4197
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
  
 0.712
RPD_2416
Protein of unknown function DUF6, transmembrane.
  
     0.466
RPD_3153
Tetratricopeptide TPR_2.
 
 
 0.448
RPD_2911
Protein of unknown function DUF6, transmembrane.
  
     0.437
RPD_4192
Ferric reductase-like transmembrane component-like.
       0.423
RPD_4193
Conserved hypothetical protein.
       0.423
RPD_4191
Cytochrome b5.
       0.410
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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