Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPD_4200Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (333 aa)    
Predicted Functional Partners:
RPD_4199
Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.995
RPD_1907
Type I secretion outer membrane protein, TolC.
  
 0.929
RPD_2577
Type I secretion outer membrane protein, TolC.
  
 0.929
RPD_2680
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
  0.914
RPD_3329
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
  0.914
RPD_3781
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
  0.914
RPD_4202
Conserved hypothetical protein.
 
     0.905
RPD_2681
Hydrophobe/amphiphile efflux-1 HAE1.
 
 0.889
RPD_3780
Hydrophobe/amphiphile efflux-1 HAE1.
 
 0.889
RPD_3330
Hydrophobe/amphiphile efflux-1 HAE1.
 
 0.888
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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