RPD_4244 protein (Rhodopseudomonas palustris BisB5)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RPD_4244

Protein-disulfide reductase. (600 aa)

Predicted Functional Partners:

RPD_4245

0.935

RPD_0935

0.906

RPD_0520

0.886

RPD_4242

0.883

RPD_3416

0.796

msrA-2

0.792

msrB

0.765

RPD_1663

0.765

RPD_2436

0.762

RPD_4198

0.762

Your Current Organism:

Rhodopseudomonas palustris BisB5

NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPD_0520	RPD_0935	RPD_0520	RPD_0935	Periplasmic protein thiol.	Thioredoxin-like.	0.727
RPD_0520	RPD_1663	RPD_0520	RPD_1663	Periplasmic protein thiol.	Protein-methionine-S-oxide reductase.	0.446
RPD_0520	RPD_4244	RPD_0520	RPD_4244	Periplasmic protein thiol.	Protein-disulfide reductase.	0.886
RPD_0520	msrA-2	RPD_0520	RPD_4419	Periplasmic protein thiol.	Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.	0.720
RPD_0520	msrB	RPD_0520	RPD_1459	Periplasmic protein thiol.	Protein-methionine-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family.	0.446
RPD_0935	RPD_0520	RPD_0935	RPD_0520	Thioredoxin-like.	Periplasmic protein thiol.	0.727
RPD_0935	RPD_1663	RPD_0935	RPD_1663	Thioredoxin-like.	Protein-methionine-S-oxide reductase.	0.492
RPD_0935	RPD_4244	RPD_0935	RPD_4244	Thioredoxin-like.	Protein-disulfide reductase.	0.906
RPD_0935	msrA-2	RPD_0935	RPD_4419	Thioredoxin-like.	Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.	0.720
RPD_0935	msrB	RPD_0935	RPD_1459	Thioredoxin-like.	Protein-methionine-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family.	0.492
RPD_1663	RPD_0520	RPD_1663	RPD_0520	Protein-methionine-S-oxide reductase.	Periplasmic protein thiol.	0.446
RPD_1663	RPD_0935	RPD_1663	RPD_0935	Protein-methionine-S-oxide reductase.	Thioredoxin-like.	0.492
RPD_1663	RPD_4244	RPD_1663	RPD_4244	Protein-methionine-S-oxide reductase.	Protein-disulfide reductase.	0.765
RPD_1663	msrA-2	RPD_1663	RPD_4419	Protein-methionine-S-oxide reductase.	Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.	0.986
RPD_2436	RPD_4244	RPD_2436	RPD_4244	DSBA oxidoreductase.	Protein-disulfide reductase.	0.762
RPD_3416	RPD_4244	RPD_3416	RPD_4244	Thiol-disulfide isomerase and thioredoxins.	Protein-disulfide reductase.	0.796
RPD_3416	msrA-2	RPD_3416	RPD_4419	Thiol-disulfide isomerase and thioredoxins.	Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.	0.704
RPD_4198	RPD_4244	RPD_4198	RPD_4244	DSBA oxidoreductase.	Protein-disulfide reductase.	0.762
RPD_4242	RPD_4244	RPD_4242	RPD_4244	ATP-binding region, ATPase-like.	Protein-disulfide reductase.	0.883
RPD_4242	RPD_4245	RPD_4242	RPD_4245	ATP-binding region, ATPase-like.	DSBA oxidoreductase.	0.663