Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPD_4247Twin-arginine translocation pathway signal. (452 aa)    
Predicted Functional Partners:
RPD_4249
Putative cytochrome subunit of sulfide dehydrogenase.
 
 
 
 0.988
RPD_4248
Sulfide dehydrogenase (flavoprotein).
 
  
 
0.977
RPD_1184
FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
 
 0.930
RPD_2380
FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
  
 
0.924
RPD_1381
Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like.
  
 0.918
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
  
 
 0.906
RPD_0343
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.904
RPD_2564
Pyridoxal-5'-phosphate-dependent enzyme, beta subunit.
    
 0.904
RPD_4250
Protein of unknown function DUF395, YeeE/YedE.
 
   
 0.897
RPD_4254
Sulfur compound chelating protein SoxZ.
 
   
 0.850
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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