Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPD_4258Protein of unknown function DUF336. (168 aa)    
Predicted Functional Partners:
RPD_4257
Conserved hypothetical protein.
     
 0.790
RPD_4256
Conserved hypothetical protein.
       0.773
RPD_4255
Thiosulfate-binding protein SoxY.
 
     0.610
RPD_4254
Sulfur compound chelating protein SoxZ.
 
     0.559
RPD_4264
Conserved hypothetical protein.
 
     0.533
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
  
 0.518
pqqC
Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
 
    0.501
RPD_4253
Sulfate thiol esterase SoxB; Belongs to the 5'-nucleotidase family.
 
     0.495
RPD_4135
Protein of unknown function DUF224, cysteine-rich region.
 
  
 0.469
RPD_4251
Sulfur dehydrogenase subunit SoxD.
 
     0.464
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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