Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_4261Hypothetical protein. (143 aa)    
Predicted Functional Partners:
RPD_4263
Protein of unknown function DUF395, YeeE/YedE.
 
     0.938
RPD_4259
Conserved hypothetical protein.
 
     0.931
RPD_4262
Transcriptional regulator, ArsR family.
 
   
 0.869
RPD_4255
Thiosulfate-binding protein SoxY.
 
   
 0.798
RPD_4254
Sulfur compound chelating protein SoxZ.
 
   
 0.794
RPD_4250
Protein of unknown function DUF395, YeeE/YedE.
 
     0.792
RPD_4253
Sulfate thiol esterase SoxB; Belongs to the 5'-nucleotidase family.
 
   
 0.781
RPD_4260
Cytochrome c biogenesis protein, transmembrane region.
 
   
 0.778
RPD_4251
Sulfur dehydrogenase subunit SoxD.
 
     0.777
RPD_4252
Sulfur dehydrogenase subunit SoxC.
 
     0.776
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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