Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPD_4319Sel1. (367 aa)    
Predicted Functional Partners:
RPD_4317
Fructose-bisphosphate aldolase.
 
    0.904
RPD_4318
Thiamine monophosphate synthase.
       0.868
RPD_2933
Tetratricopeptide TPR_2.
 
     0.776
RPD_4320
Inositol-1(or 4)-monophosphatase.
       0.640
RPD_4316
Transcriptional modulator of MazE/toxin, MazF.
       0.572
RPD_4315
Conserved hypothetical protein.
       0.570
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
       0.518
RPD_3720
AAA ATPase, central region.
   
 0.481
RPD_1694
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
 
 0.417
dnaK
Chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 
 0.416
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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