Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPD_4373Extracellular solute-binding protein, family 1. (437 aa)    
Predicted Functional Partners:
RPD_0185
Binding-protein-dependent transport systems inner membrane component.
 
 0.982
ugpE
Binding-protein-dependent transport systems inner membrane component; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
 0.981
ugpC
ABC transporter related; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
 
 0.933
RPD_0186
Extracellular solute-binding protein, family 1.
  
  
 
0.904
RPD_3149
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.719
RPD_3150
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.709
RPD_2909
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.662
RPD_3321
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.658
RPD_3323
ABC transporter related; Belongs to the ABC transporter superfamily.
 
 
 0.644
RPD_2907
ABC transporter related; Belongs to the ABC transporter superfamily.
 
 
 0.617
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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