Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_4374ATP-binding region, ATPase-like. (690 aa)    
Predicted Functional Partners:
RPD_4375
Response regulator receiver sensor signal transduction histidine kinase.
 
 
 
 0.938
RPD_4376
Two component transcriptional regulator, winged helix family.
 
 
 
 0.886
RPD_3061
Conserved hypothetical protein.
  
     0.704
RPD_2883
Methyltransferase FkbM.
 
     0.703
RPD_3795
Conserved hypothetical protein.
  
     0.679
RPD_1003
Adenylyl cyclase class-3/4/guanylyl cyclase.
 
 
 
 0.651
RPD_4076
Hpt sensor hybrid histidine kinase.
 
 
0.650
RPD_4416
Response regulator receiver modulated metal dependent phosphohydrolase.
  
    0.640
RPD_2989
Conserved hypothetical protein.
 
   
 0.636
RPD_3964
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
  
    0.623
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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