Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_4376Two component transcriptional regulator, winged helix family. (247 aa)    
Predicted Functional Partners:
RPD_4375
Response regulator receiver sensor signal transduction histidine kinase.
 
 
 0.958
RPD_4076
Hpt sensor hybrid histidine kinase.
 
 
0.913
RPD_4374
ATP-binding region, ATPase-like.
 
 
 
 0.886
RPD_1497
Hpt sensor hybrid histidine kinase.
 
 
0.852
RPD_0887
Histidine kinase.
 
 
 0.835
RPD_0119
Sensor histidine kinase with PAS/PAC.
 
 
 0.831
RPD_3277
PAS/PAC sensor hybrid histidine kinase.
 
 
 0.827
RPD_0284
PAS/PAC sensor hybrid histidine kinase.
 
 
 0.825
nuoC
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
   0.759
RPD_1944
Multi-sensor signal transduction histidine kinase.
 
 
 0.743
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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