Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_4385Conserved hypothetical protein. (181 aa)    
Predicted Functional Partners:
RPD_0939
4-carboxymuconolactone decarboxylase.
    
 0.908
cysC
Sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
   
    0.619
RPD_4384
acyl-CoA dehydrogenase-like.
  
  
 0.602
RPD_1820
Cytochrome P450.
  
  
 0.514
RPD_2910
Twin-arginine translocation pathway signal.
  
     0.509
RPD_2437
1-Cys peroxiredoxin.
  
  
 0.480
RPD_3112
Dihydrodipicolinate synthetase; Belongs to the DapA family.
  
     0.428
RPD_4084
Beta-lactamase-like.
  
     0.414
RPD_1860
FAD dependent oxidoreductase.
 
     0.400
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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