Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPD_4409Iron-containing alcohol dehydrogenase. (417 aa)    
Predicted Functional Partners:
RPD_2210
Catechol 1,2-dioxygenase.
 
 0.966
RPD_1304
Carboxymethylenebutenolidase.
  
 
 0.915
RPD_3874
Dienelactone hydrolase.
  
 
 0.915
RPD_2034
Alcohol dehydrogenase, zinc-binding; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
   
 
 0.779
RPD_2972
Alcohol dehydrogenase GroES-like.
  
 
 0.722
RPD_3495
Alcohol dehydrogenase GroES-like.
  
 
 0.722
RPD_4410
AMP-dependent synthetase and ligase.
       0.698
glgA
Glycogen/starch synthases, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
  
 0.659
RPD_0959
Pyruvate flavodoxin/ferredoxin oxidoreductase-like.
 
  
 0.657
RPD_2524
Conserved hypothetical protein.
  
 
 0.575
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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