STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPB_0459Endonuclease/exonuclease/phosphatase family. (380 aa)    
Predicted Functional Partners:
RPB_4469
Conserved hypothetical protein.
  
     0.571
RPB_0297
Histidine kinase, HAMP region.
  
    0.558
RPB_3437
Outer membrane autotransporter.
 
     0.556
RPB_3800
Protein of unknown function DUF1522; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
 
   0.512
RPB_3359
Radical SAM.
  
     0.502
RPB_3813
Methyltransferase FkbM.
  
     0.496
RPB_3820
Conserved hypothetical protein.
  
     0.487
RPB_2712
Conserved hypothetical protein.
  
     0.482
RPB_3814
Protein of unknown function DUF1522; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
     0.465
RPB_0458
Protein of unknown function DUF81.
       0.456
Your Current Organism:
Rhodopseudomonas palustris HaA2
NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.