STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPB_0517BLUF. (141 aa)    
Predicted Functional Partners:
RPB_0518
Diguanylate cyclase/phosphodiesterase.
  
  
 0.837
RPB_4224
Hpt sensor hybrid histidine kinase.
  
 
 0.725
RPB_3852
Hpt sensor hybrid histidine kinase.
  
  
 0.621
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
  
    0.619
RPB_3230
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
  
 
 0.532
RPB_0519
Na+/H+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
       0.489
RPB_3920
CheA-like signal transduction histidine kinase.
  
  
 0.462
RPB_0183
Serine/threonine protein kinase and signal transduction histidine kinase.
  
  
 0.459
RPB_0214
GAF sensor signal transduction histidine kinase.
  
  
 0.459
RPB_0712
PAS/PAC sensor hybrid histidine kinase.
  
 
 0.452
Your Current Organism:
Rhodopseudomonas palustris HaA2
NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2
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