Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RPB_0811 | RPB_1779 | Conserved hypothetical protein. | Type II secretion system protein. | 0.692 |
RPB_0811 | RPB_1780 | Conserved hypothetical protein. | Type II secretion system protein. | 0.748 |
RPB_0811 | RPB_1782 | Conserved hypothetical protein. | Pilus assembly protein cpaE. | 0.831 |
RPB_0811 | RPB_1783 | Conserved hypothetical protein. | Type IV pili component-like. | 0.665 |
RPB_0811 | RPB_1785 | Conserved hypothetical protein. | Flp pilus assembly CpaB. | 0.790 |
RPB_0811 | RPB_1790 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.706 |
RPB_0811 | RPB_2137 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.701 |
RPB_0811 | RPB_3799 | Conserved hypothetical protein. | Flagellar FlbT. | 0.705 |
RPB_0811 | RPB_3844 | Conserved hypothetical protein. | Hpt protein. | 0.652 |
RPB_0811 | RPB_4538 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.668 |
RPB_1779 | RPB_0811 | Type II secretion system protein. | Conserved hypothetical protein. | 0.692 |
RPB_1779 | RPB_1780 | Type II secretion system protein. | Type II secretion system protein. | 0.994 |
RPB_1779 | RPB_1782 | Type II secretion system protein. | Pilus assembly protein cpaE. | 0.989 |
RPB_1779 | RPB_1783 | Type II secretion system protein. | Type IV pili component-like. | 0.916 |
RPB_1779 | RPB_1785 | Type II secretion system protein. | Flp pilus assembly CpaB. | 0.987 |
RPB_1779 | RPB_1790 | Type II secretion system protein. | Conserved hypothetical protein. | 0.863 |
RPB_1779 | RPB_3799 | Type II secretion system protein. | Flagellar FlbT. | 0.827 |
RPB_1779 | RPB_3844 | Type II secretion system protein. | Hpt protein. | 0.681 |
RPB_1779 | RPB_4538 | Type II secretion system protein. | Conserved hypothetical protein. | 0.402 |
RPB_1780 | RPB_0811 | Type II secretion system protein. | Conserved hypothetical protein. | 0.748 |
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