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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPB_1663Extracellular ligand-binding receptor. (398 aa)    
Predicted Functional Partners:
RPB_1662
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.950
RPB_1661
ABC transporter related.
 
  
 0.903
RPB_1660
ABC transporter related.
 
  
 0.878
RPB_2083
Inner-membrane translocator ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.802
RPB_1667
6-hydroxynicotinate reductase.
 
     0.801
RPB_1664
Protein of unknown function DUF1185.
 
   
 0.793
RPB_1665
Protein of unknown function DUF1185.
 
     0.793
RPB_1659
Transcriptional regulator, MarR family.
 
     0.782
RPB_1666
Protein of unknown function DUF375; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
     0.776
RPB_1671
Enamidase.
 
     0.643
Your Current Organism:
Rhodopseudomonas palustris HaA2
NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2
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