Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RPB_1860 | RPB_1861 | RPB_1860 | RPB_1861 | Alpha/beta hydrolase. | Conserved hypothetical protein. | 0.805 |
RPB_1860 | RPB_1862 | RPB_1860 | RPB_1862 | Alpha/beta hydrolase. | Transcriptional regulator. | 0.792 |
RPB_1860 | purD | RPB_1860 | RPB_1863 | Alpha/beta hydrolase. | Phosphoribosylamine--glycine ligase; Belongs to the GARS family. | 0.642 |
RPB_1860 | xseA | RPB_1860 | RPB_1859 | Alpha/beta hydrolase. | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.550 |
RPB_1861 | RPB_1860 | RPB_1861 | RPB_1860 | Conserved hypothetical protein. | Alpha/beta hydrolase. | 0.805 |
RPB_1861 | RPB_1862 | RPB_1861 | RPB_1862 | Conserved hypothetical protein. | Transcriptional regulator. | 0.796 |
RPB_1861 | purD | RPB_1861 | RPB_1863 | Conserved hypothetical protein. | Phosphoribosylamine--glycine ligase; Belongs to the GARS family. | 0.624 |
RPB_1861 | xseA | RPB_1861 | RPB_1859 | Conserved hypothetical protein. | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.547 |
RPB_1862 | RPB_1860 | RPB_1862 | RPB_1860 | Transcriptional regulator. | Alpha/beta hydrolase. | 0.792 |
RPB_1862 | RPB_1861 | RPB_1862 | RPB_1861 | Transcriptional regulator. | Conserved hypothetical protein. | 0.796 |
RPB_1862 | RPB_2690 | RPB_1862 | RPB_2690 | Transcriptional regulator. | Conserved hypothetical protein. | 0.603 |
RPB_1862 | RPB_3337 | RPB_1862 | RPB_3337 | Transcriptional regulator. | Substrate-binding region of ABC-type glycine betaine/choline transport system. | 0.463 |
RPB_1862 | purD | RPB_1862 | RPB_1863 | Transcriptional regulator. | Phosphoribosylamine--glycine ligase; Belongs to the GARS family. | 0.622 |
RPB_1862 | xseA | RPB_1862 | RPB_1859 | Transcriptional regulator. | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.544 |
RPB_2690 | RPB_1862 | RPB_2690 | RPB_1862 | Conserved hypothetical protein. | Transcriptional regulator. | 0.603 |
RPB_3337 | RPB_1862 | RPB_3337 | RPB_1862 | Substrate-binding region of ABC-type glycine betaine/choline transport system. | Transcriptional regulator. | 0.463 |
purD | RPB_1860 | RPB_1863 | RPB_1860 | Phosphoribosylamine--glycine ligase; Belongs to the GARS family. | Alpha/beta hydrolase. | 0.642 |
purD | RPB_1861 | RPB_1863 | RPB_1861 | Phosphoribosylamine--glycine ligase; Belongs to the GARS family. | Conserved hypothetical protein. | 0.624 |
purD | RPB_1862 | RPB_1863 | RPB_1862 | Phosphoribosylamine--glycine ligase; Belongs to the GARS family. | Transcriptional regulator. | 0.622 |
purD | xseA | RPB_1863 | RPB_1859 | Phosphoribosylamine--glycine ligase; Belongs to the GARS family. | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.572 |
page 1 of 2