STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPB_1908Rieske (2Fe-2S) protein. (347 aa)    
Predicted Functional Partners:
RPB_1906
Vanillate O-demethylase oxidoreductase.
 
   
 0.947
RPB_1907
Transcriptional regulator, GntR family.
 
   
 0.870
RPB_2361
Conserved hypothetical protein.
  
     0.544
RPB_1061
Protocatechuate 4,5-dioxygenase.
 
   
 0.528
RPB_3895
Ring hydroxylating dioxygenase, Rieske (2Fe-2S) protein.
 
     0.523
RPB_0872
Protocatechuate 4,5-dioxygenase.
 
   
 0.512
RPB_1909
Hypothetical protein.
       0.501
RPB_3136
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
  0.499
RPB_3896
Aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
   
 0.402
Your Current Organism:
Rhodopseudomonas palustris HaA2
NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.