Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPB_1981Drug resistance transporter EmrB/QacA subfamily; Belongs to the major facilitator superfamily. (528 aa)    
Predicted Functional Partners:
RPB_1980
Secretion protein HlyD.
 
 
 0.953
RPB_0207
Secretion protein HlyD.
 
 
 0.870
RPB_1982
Conserved hypothetical protein.
       0.605
RPB_1983
Filamentation induced by cAMP protein Fic.
       0.605
RPB_1979
Transcriptional regulator, TetR family.
 
     0.563
RPB_2783
Major facilitator superfamily MFS_1.
  
   
 0.459
RPB_3883
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.416
Your Current Organism:
Rhodopseudomonas palustris HaA2
NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2
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