STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPB_2394Conserved hypothetical protein. (456 aa)    
Predicted Functional Partners:
RPB_1785
Flp pilus assembly CpaB.
 
  
 0.884
RPB_1782
Pilus assembly protein cpaE.
 
  
 0.882
RPB_1780
Type II secretion system protein.
 
  
 0.847
RPB_1779
Type II secretion system protein.
 
    0.815
RPB_1789
TadE-like.
 
    0.809
RPB_3799
Flagellar FlbT.
  
    0.797
RPB_1790
Conserved hypothetical protein.
 
   
 0.771
RPB_1784
Type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.751
RPB_1781
Type II secretion system protein E.
 
  
 0.705
RPB_3800
Protein of unknown function DUF1522; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
    0.675
Your Current Organism:
Rhodopseudomonas palustris HaA2
NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.