STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPB_2443Uncharacterized protein UPF0065. (339 aa)    
Predicted Functional Partners:
RPB_2034
Protein of unknown function DUF112, transmembrane.
 
  
 0.868
RPB_3430
Protein of unknown function DUF112, transmembrane.
 
  
 0.868
RPB_4417
Protein of unknown function DUF112, transmembrane.
 
  
 0.868
RPB_2033
TctB subunit of the tripartite tricarboxylate transport(TTT) family.
 
  
 0.653
RPB_3429
Conserved hypothetical protein.
 
  
 0.566
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
       0.528
RPB_2444
NnrU.
       0.527
Your Current Organism:
Rhodopseudomonas palustris HaA2
NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.