Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RPB_2678 | RPB_2680 | RPB_2678 | RPB_2680 | Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family. | DNA polymerase III, delta prime subunit. | 0.897 |
RPB_2678 | RPB_2682 | RPB_2678 | RPB_2682 | Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family. | TatD-related deoxyribonuclease. | 0.651 |
RPB_2678 | RPB_2683 | RPB_2678 | RPB_2683 | Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family. | Hydrolase. | 0.661 |
RPB_2678 | metG | RPB_2678 | RPB_2681 | Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily. | 0.674 |
RPB_2678 | tmk | RPB_2678 | RPB_2679 | Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.892 |
RPB_2680 | RPB_2678 | RPB_2680 | RPB_2678 | DNA polymerase III, delta prime subunit. | Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family. | 0.897 |
RPB_2680 | RPB_2682 | RPB_2680 | RPB_2682 | DNA polymerase III, delta prime subunit. | TatD-related deoxyribonuclease. | 0.710 |
RPB_2680 | RPB_2683 | RPB_2680 | RPB_2683 | DNA polymerase III, delta prime subunit. | Hydrolase. | 0.714 |
RPB_2680 | metG | RPB_2680 | RPB_2681 | DNA polymerase III, delta prime subunit. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily. | 0.738 |
RPB_2680 | tmk | RPB_2680 | RPB_2679 | DNA polymerase III, delta prime subunit. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.912 |
RPB_2682 | RPB_2678 | RPB_2682 | RPB_2678 | TatD-related deoxyribonuclease. | Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family. | 0.651 |
RPB_2682 | RPB_2680 | RPB_2682 | RPB_2680 | TatD-related deoxyribonuclease. | DNA polymerase III, delta prime subunit. | 0.710 |
RPB_2682 | RPB_2683 | RPB_2682 | RPB_2683 | TatD-related deoxyribonuclease. | Hydrolase. | 0.907 |
RPB_2682 | metG | RPB_2682 | RPB_2681 | TatD-related deoxyribonuclease. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily. | 0.975 |
RPB_2682 | tmk | RPB_2682 | RPB_2679 | TatD-related deoxyribonuclease. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.718 |
RPB_2683 | RPB_2678 | RPB_2683 | RPB_2678 | Hydrolase. | Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family. | 0.661 |
RPB_2683 | RPB_2680 | RPB_2683 | RPB_2680 | Hydrolase. | DNA polymerase III, delta prime subunit. | 0.714 |
RPB_2683 | RPB_2682 | RPB_2683 | RPB_2682 | Hydrolase. | TatD-related deoxyribonuclease. | 0.907 |
RPB_2683 | RPB_4082 | RPB_2683 | RPB_4082 | Hydrolase. | Phosphonate metabolism PhnM. | 0.490 |
RPB_2683 | RPB_4092 | RPB_2683 | RPB_4092 | Hydrolase. | Phosphonate metabolism PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family. | 0.939 |
page 1 of 3