Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RPB_0487 | RPB_2904 | RPB_0487 | RPB_2904 | Anti-sigm factor, ChrR. | Amine oxidase. | 0.869 |
RPB_0487 | RPB_2905 | RPB_0487 | RPB_2905 | Anti-sigm factor, ChrR. | Protein of unknown function DUF1365. | 0.783 |
RPB_0487 | RPB_2906 | RPB_0487 | RPB_2906 | Anti-sigm factor, ChrR. | Cyclopropane-fatty-acyl-phospholipid synthase. | 0.640 |
RPB_0487 | RPB_2923 | RPB_0487 | RPB_2923 | Anti-sigm factor, ChrR. | Conserved hypothetical protein. | 0.491 |
RPB_2904 | RPB_0487 | RPB_2904 | RPB_0487 | Amine oxidase. | Anti-sigm factor, ChrR. | 0.869 |
RPB_2904 | RPB_2905 | RPB_2904 | RPB_2905 | Amine oxidase. | Protein of unknown function DUF1365. | 0.992 |
RPB_2904 | RPB_2906 | RPB_2904 | RPB_2906 | Amine oxidase. | Cyclopropane-fatty-acyl-phospholipid synthase. | 0.994 |
RPB_2904 | RPB_2923 | RPB_2904 | RPB_2923 | Amine oxidase. | Conserved hypothetical protein. | 0.706 |
RPB_2905 | RPB_0487 | RPB_2905 | RPB_0487 | Protein of unknown function DUF1365. | Anti-sigm factor, ChrR. | 0.783 |
RPB_2905 | RPB_2904 | RPB_2905 | RPB_2904 | Protein of unknown function DUF1365. | Amine oxidase. | 0.992 |
RPB_2905 | RPB_2906 | RPB_2905 | RPB_2906 | Protein of unknown function DUF1365. | Cyclopropane-fatty-acyl-phospholipid synthase. | 0.994 |
RPB_2905 | RPB_2923 | RPB_2905 | RPB_2923 | Protein of unknown function DUF1365. | Conserved hypothetical protein. | 0.827 |
RPB_2906 | RPB_0487 | RPB_2906 | RPB_0487 | Cyclopropane-fatty-acyl-phospholipid synthase. | Anti-sigm factor, ChrR. | 0.640 |
RPB_2906 | RPB_2904 | RPB_2906 | RPB_2904 | Cyclopropane-fatty-acyl-phospholipid synthase. | Amine oxidase. | 0.994 |
RPB_2906 | RPB_2905 | RPB_2906 | RPB_2905 | Cyclopropane-fatty-acyl-phospholipid synthase. | Protein of unknown function DUF1365. | 0.994 |
RPB_2906 | RPB_2923 | RPB_2906 | RPB_2923 | Cyclopropane-fatty-acyl-phospholipid synthase. | Conserved hypothetical protein. | 0.585 |
RPB_2922 | RPB_2923 | RPB_2922 | RPB_2923 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.525 |
RPB_2923 | RPB_0487 | RPB_2923 | RPB_0487 | Conserved hypothetical protein. | Anti-sigm factor, ChrR. | 0.491 |
RPB_2923 | RPB_2904 | RPB_2923 | RPB_2904 | Conserved hypothetical protein. | Amine oxidase. | 0.706 |
RPB_2923 | RPB_2905 | RPB_2923 | RPB_2905 | Conserved hypothetical protein. | Protein of unknown function DUF1365. | 0.827 |
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