Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPB_3209Glutathione S-transferase-like; Belongs to the GST superfamily. (239 aa)    
Predicted Functional Partners:
RPB_3210
Methionine synthase (B12-independent).
  
  
 0.533
RPB_3950
Glutathione S-transferase-like.
 
   
 0.480
RPB_3704
Glutaredoxin-related protein; Belongs to the glutaredoxin family. Monothiol subfamily.
 
  
 0.433
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.426
RPB_3418
Alcohol dehydrogenase superfamily, zinc-containing; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
   
 0.426
RPB_0432
NADPH-dependent FMN reductase.
  
    0.423
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.423
RPB_2940
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.418
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.417
rplR
LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
   
   0.412
Your Current Organism:
Rhodopseudomonas palustris HaA2
NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2
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