STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPB_3248Diguanylate cyclase. (420 aa)    
Predicted Functional Partners:
RPB_3853
Response regulator receiver modulated diguanylate phosphodiesterase.
 
 0.855
RPB_4335
Response regulator receiver modulated diguanylate phosphodiesterase.
 
  
 0.829
RPB_4638
Diguanylate cyclase/phosphodiesterase.
 
 0.814
RPB_2330
Metal dependent phosphohydrolase.
  
 0.806
RPB_4224
Hpt sensor hybrid histidine kinase.
 
 0.647
RPB_4706
Response regulator receiver modulated metal dependent phosphohydrolase.
 
 
 0.629
RPB_3852
Hpt sensor hybrid histidine kinase.
 
 0.587
RPB_3230
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
0.569
RPB_3247
Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family.
  
    0.557
RPB_0183
Serine/threonine protein kinase and signal transduction histidine kinase.
 
 
 0.540
Your Current Organism:
Rhodopseudomonas palustris HaA2
NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2
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