STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPB_4214Binding-protein-dependent transport systems inner membrane component. (300 aa)    
Predicted Functional Partners:
RPB_4213
Binding-protein-dependent transport systems inner membrane component.
 
 0.997
RPB_4215
ABC transporter related; Belongs to the ABC transporter superfamily.
 
 0.997
RPB_4216
ABC transporter related; Belongs to the ABC transporter superfamily.
 
 0.996
RPB_4211
Extracellular solute-binding protein, family 1.
 
 0.986
RPB_4212
Conserved hypothetical protein.
 
    0.905
RPB_4217
FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
   
 0.835
RPB_2548
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.769
RPB_4218
Transcriptional regulator, DeoR family.
 
   
 0.769
RPB_0175
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.727
RPB_2099
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.698
Your Current Organism:
Rhodopseudomonas palustris HaA2
NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2
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