STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPB_4330TRAP transporter, 4TM/12TM fusion protein. (706 aa)    
Predicted Functional Partners:
RPB_4331
TRAP transporter solute receptor, TAXI family.
 
 
  0.992
RPB_4329
Conserved hypothetical protein.
 
    0.976
RPB_3580
TRAP dicarboxylate transporter DctM subunit.
  
     0.562
RPB_2110
TRAP transporter solute receptor, TAXI family.
 
    0.540
RPB_3329
TRAP dicarboxylate transporter DctP subunit.
  
     0.532
RPB_3495
Conserved hypothetical protein.
 
    0.493
RPB_0100
TRAP transporter solute receptor, TAXI family.
 
    0.460
RPB_4328
Short-chain dehydrogenase/reductase SDR.
       0.447
RPB_3328
Tripartite ATP-independent periplasmic transporter, DctQ component.
  
     0.435
Your Current Organism:
Rhodopseudomonas palustris HaA2
NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.