Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Geob_0076Metal-dependent hydrolase superfamily protein. (330 aa)    
Predicted Functional Partners:
Geob_0075
(acyl)-sn-glycerol-3-phosphate acyltransferase and acyl-(acyl carrier protein) ligase, major facilitator superfamily domain-containing.
 
   
 0.839
Geob_0067
Protein of unknown function, DUF830-containing.
 
     0.789
Geob_0077
Sigma-54-dependent transcriptional regulator; Domains: sigma54 interaction.
 
     0.575
Geob_3466
Transglutaminase/protease-like domain protein.
  
     0.562
Geob_0980
Transglutaminase/protease-like domain protein.
  
     0.540
Geob_1914
Outer membrane lipoprotein carrier/sorting protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.527
Geob_0811
Transglutaminase/protease-like domain protein.
  
     0.525
rtcB
Protein of unknown function UPF0027; Belongs to the RtcB family.
   
    0.525
Geob_0736
Membrane protein, putative.
  
     0.520
Geob_1671
TIM alpha/beta-barrel protein.
 
     0.492
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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