Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Geob_0100Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (399 aa)    
Predicted Functional Partners:
bbsA
benzoylsuccinyl-CoA thiolase subunit.
  
 
 0.910
Geob_0244
3-hydroxyacyl-CoA dehydrogenase.
 0.899
Geob_0162
3-hydroxyacyl-CoA dehydrogenase.
 0.897
Geob_0170
3-hydroxyacyl-CoA dehydrogenase.
 0.874
Geob_0221
3-hydroxyacyl-CoA dehydrogenase.
 
 0.863
bamR
cyclohexa-1,5-dienecarbonyl-CoA hydratase.
  
 0.825
Geob_0245
enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.777
Geob_0242
enoyl-CoA hydratase/isomerase.
  
 0.754
bbsH
(E)-2-benzylidenesuccinyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.735
Geob_0163
enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.734
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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