STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Geob_0148Sigma-54-dependent sensor transcriptional regulator, CBS_pair and PAS domain-containing; Domains: CBS_pair, PAS, sigma54 interaction, HTH8. (678 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.805
rmlB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.692
tyv
CDP-paratose 2-epimerase.
  
 
 0.692
ribA
3,4-dihydroxy-2-butanone-4-phosphate synthase and GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.681
guaA
Guanosine-5'-monophosphate synthetase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.653
Geob_0429
NDP-hexose 3-oxoreductase.
  
  
 0.568
Geob_3243
NAD(P)-dependent oxidoreductase.
  
  
 0.568
cheY40H-3
Response receiver CheY associated with MCPs of class 40H.
  
 
 0.542
Geob_0430
Aminotransferase, AHBA_syn family; Belongs to the DegT/DnrJ/EryC1 family.
   
  
 0.539
arnB
UDP-beta-L-threo-pentopyranos-4-ulose 4-(Re)-aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
   
  
 0.539
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.