Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
bamYBenzoate--coenzyme A ligase. (519 aa)    
Predicted Functional Partners:
fumB
Fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.671
bbsB
benzoylsuccinyl-CoA thiolase subunit; Belongs to the thiolase-like superfamily. Thiolase family.
 
  
 0.662
Geob_0199
Lipoprotein, putative.
       0.658
bamA
6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase.
 
 
 0.652
Geob_0156
Protein of unknown function DUF485.
  
  
 0.638
Geob_0174
Protein of unknown function DUF485.
  
  
 0.638
Geob_2329
Protein of unknown function DUF485.
  
  
 0.638
por
Pyruvate:ferredoxin/flavodoxin oxidoreductase.
  
  
 0.636
Geob_3236
Long-chain acyl-CoA synthetase; Acyl-(acyl carrier protein) ligase, acyl carrier, (acyl)-sn-glycerol-3-phosphate acyltransferase fusion protein.
 
  
0.606
Geob_3146
Flavin oxidoreductase, PfaD family, putative.
  
 
 0.600
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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