Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Geob_0342Protein of unknown function DUF1469. (132 aa)    
Predicted Functional Partners:
Geob_0278
Ferritin-like protein of unknown function DUF2383.
 
    0.867
Geob_0340
Hypothetical protein.
 
     0.808
Geob_0341
Hypothetical protein.
       0.773
Geob_0276
Formaldehyde dehydrogenase-related protein, glutathione-dependent.
  
     0.637
Geob_3314
Protein of unknown function DUF1540.
  
     0.621
Geob_3244
Glycosyltransferase.
  
     0.579
fdh
Formaldehyde dehydrogenase, glutathione-dependent.
  
     0.565
Geob_0396
VWFA superfamily protein; Belongs to the UPF0229 family.
   
    0.549
Geob_3247
Glycosyltransferase, putative.
  
     0.540
Geob_3246
Glycosyltransferase, putative.
  
     0.525
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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