Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Geob_0366Efflux pump, RND family, outer membrane protein. (419 aa)    
Predicted Functional Partners:
Geob_0364
Efflux pump, RND family, membrane fusion protein.
 
 
 0.952
Geob_0365
ABC transporter, ATP-binding/membrane protein.
 
  
 0.941
Geob_0368
Cadherin domain protein.
  
  
 0.789
Geob_0732
Efflux pump, RND family, membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.781
Geob_0367
TPR domain protein.
       0.778
Geob_0477
Efflux pump, RND family, membrane fusion lipoprotein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.770
Geob_0949
Efflux pump, RND family, membrane fusion lipoprotein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.705
Geob_2354
Efflux pump, RND family, membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.705
Geob_2771
Efflux pump, RND family, membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.705
Geob_3329
Efflux pump, RND family, membrane fusion protein.
 
 
 0.683
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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