Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Geob_0652TPR domain protein. (458 aa)    
Predicted Functional Partners:
Geob_0650
SAM-dependent methyltransferase, type 11.
   
   0.785
Geob_0648
TPR domain protein.
  
 
 0.774
Geob_0653
SAM-dependent methyltransferase, putative.
       0.773
Geob_0654
Hypothetical protein.
       0.773
Geob_0655
Radical SAM domain iron-sulfur cluster-binding oxidoreductase.
       0.773
Geob_0651
SAM-dependent methyltransferase and glycosyltransferase, TPR domain-containing.
     
 0.770
Geob_0649
SAM-dependent methyltransferase, TPR domain-containing.
       0.723
Geob_0656
Hypothetical protein.
       0.658
Geob_0657
Hypothetical protein.
       0.605
Geob_0658
O-carbamyltransferase, putative.
       0.605
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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