Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Geob_0705Hypothetical protein. (248 aa)    
Predicted Functional Partners:
dmeF
Cobalt/zinc/iron/cadmium/nickel efflux protein.
       0.661
gspC
Type II secretion system protein GspC, putative serine protease.
  
     0.643
gspL
Type II secretion system protein GspL, putative.
  
     0.639
Geob_1724
Cytochrome c, 10 heme-binding sites.
  
     0.619
Geob_3313
Hypothetical protein.
  
     0.617
Geob_3815
Hypothetical protein.
  
     0.613
Geob_3357
Hypothetical protein.
  
     0.608
Geob_3256
Metallophosphoesterase, putative.
  
     0.606
Geob_2140
Hypothetical protein.
  
     0.589
Geob_1682
Lipoprotein cytochrome c, 9 heme-binding sites.
  
     0.535
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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