Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Geob_0764Cytochrome c, 6 heme-binding sites. (251 aa)    
Predicted Functional Partners:
Geob_0763
Cytochrome c, 6 heme-binding sites.
 
    
0.799
Geob_0765
Hypothetical protein.
       0.773
Geob_2338
Cytochrome c, 3 heme-binding sites.
  
     0.741
Geob_1740
Cytochrome c, 4 heme-binding sites.
  
   0.723
Geob_1430
Cytochrome c, 8 heme-binding sites.
  
     0.710
Geob_2640
Cytochrome c, 4 heme-binding sites.
  
   0.705
Geob_3298
Transglutaminase-like cysteine protease.
  
     0.705
Geob_3176
Lipoprotein cytochrome c, 7 heme-binding sites.
  
     0.683
Geob_1432
Cytochrome c, 4 heme-binding sites.
  
   0.660
Geob_0908
TPR domain protein.
  
     0.641
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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