Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Geob_0770Hypothetical protein. (111 aa)    
Predicted Functional Partners:
Geob_0769
Hypothetical protein.
  
    0.728
Geob_0842
Outer membrane channel, OmpJ-related.
  
     0.710
Geob_1573
Membrane protein DUF2232, putative.
  
     0.579
Geob_1850
Ketose-1,6-bisphosphate aldolase, class II, putative.
  
     0.568
Geob_1306
Pentapeptide repeat protein.
  
     0.517
Geob_1543
Membrane protein, putative.
  
     0.508
Geob_1622
Protein of unknown function, MJ0042_CXXC and DUF3426 domain-containing.
  
     0.488
prkA
Protein serine/threonine kinase PrkA.
  
     0.485
Geob_0394
ATPase, AAA family.
  
     0.484
Geob_0622
Outer membrane surface lipoprotein.
  
     0.442
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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