Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Geob_0809Response regulator; Domains: REC. (140 aa)    
Predicted Functional Partners:
gcvT
Glycine cleavage system T protein.
  
 0.968
gcvP2
Glycine cleavage system P protein, subunit 2.
  
 0.957
gcvP1
Glycine cleavage system P protein, subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.
  
 
 0.852
lplA
Lipoate--protein ligase A.
   
 0.818
lipA
Lipoate synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
  
 0.749
Geob_0808
Hypothetical protein.
       0.727
cheY40H-5
Response receiver CheY associated with MCPs of class 40H.
  
   
 0.686
Geob_3566
Response receiver; Domains: REC.
 
 
 0.684
Geob_3390
Sensor histidine kinase, PAS domain-containing; Domains: PAS, HisKA, HATPase_c.
 
 
   0.671
cheY64H-2
Response receiver CheY associated with MCPs of classes 40H and 40+24H.
 
    0.663
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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