Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
Geob_0873Hypothetical protein. (103 aa)    
Predicted Functional Partners:
ccoN
Cytochrome c oxidase, cbb3-type, subunit I.
       0.773
ccoP
Cytochrome c oxidase, cbb3-type, diheme subunit.
       0.773
Geob_0871
Hypothetical protein.
       0.773
Geob_0872
Hypothetical protein.
       0.773
actE
Menaquinol oxidoreductase complex ACIII, cytochrome c subunit ActE, 1 heme-binding site.
       0.773
actCD
Menaquinol oxidoreductase complex ACIII, menaquinol-binding membrane protein subunit ActC and DUF3341 subunit ActD.
       0.572
actF
Menaquinol oxidoreductase complex ACIII, menaquinol-binding membrane protein subunit ActF.
       0.572
actA
Menaquinol oxidoreductase complex ACIII, cytochrome c subunit ActA, 5 heme-binding sites.
       0.572
Geob_0875
Sensor histidine kinase; HisKA, HATPase_c.
       0.460
actB
Menaquinol oxidoreductase complex ACIII, molybdopterin-binding-like and iron-sulfur cluster-binding subunit ActB; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.429
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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