Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gspCType II secretion system protein GspC, putative serine protease. (292 aa)    
Predicted Functional Partners:
gspD
Type II secretion system protein GspD, putative.
 
 
 0.989
pilQ
Type IV pilus secretin lipoprotein PilQ.
 
 
 0.932
gspJ
Type II secretion system minor pseudopilin GspJ.
 
  
 0.888
gspL
Type II secretion system protein GspL, putative.
 
   
 0.880
gspK
Type II secretion system minor pseudopilin GspK.
 
  
 0.772
gspF
Type II secretion system inner membrane protein GspF.
 
  
 0.754
gspG
Type II secretion system major pseudopilin GspG.
 
  
 0.711
gspE
Type II secretion system ATPase GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
  
 0.655
Geob_0705
Hypothetical protein.
  
     0.643
Geob_1682
Lipoprotein cytochrome c, 9 heme-binding sites.
  
     0.639
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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